Merge pull request #349 from JocaPC/master

Adding CLR transitive closure sample
This commit is contained in:
Jovan Popovic (MSFT)
2017-12-22 23:14:52 +01:00
committed by GitHub
7 changed files with 559 additions and 0 deletions
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*.cproj.user
.vs/*
.vscode/*
bin/*
obj/*
Properties/PublishProfiles/*
TransitiveClosure.sql
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using System.Reflection;
using System.Runtime.CompilerServices;
using System.Runtime.InteropServices;
// General Information about an assembly is controlled through the following
// set of attributes. Change these attribute values to modify the information
// associated with an assembly.
[assembly: AssemblyTitle("TransitiveClosureAggregatorLibrary")]
[assembly: AssemblyDescription("")]
[assembly: AssemblyConfiguration("")]
[assembly: AssemblyCompany("")]
[assembly: AssemblyProduct("TransitiveClosureAggregatorLibrary")]
[assembly: AssemblyCopyright("Copyright © 2017")]
[assembly: AssemblyTrademark("")]
[assembly: AssemblyCulture("")]
// Setting ComVisible to false makes the types in this assembly not visible
// to COM components. If you need to access a type in this assembly from
// COM, set the ComVisible attribute to true on that type.
[assembly: ComVisible(false)]
// The following GUID is for the ID of the typelib if this project is exposed to COM
[assembly: Guid("097ef341-926d-4dd2-a434-08e9980d6089")]
// Version information for an assembly consists of the following four values:
//
// Major Version
// Minor Version
// Build Number
// Revision
//
// You can specify all the values or you can default the Build and Revision Numbers
// by using the '*' as shown below:
// [assembly: AssemblyVersion("1.0.*")]
[assembly: AssemblyVersion("1.0.0.0")]
[assembly: AssemblyFileVersion("1.0.0.0")]
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# Implementing Transitive Closure Clustering in SQL Server using CLR UDF
SQL Database don't have built-in support for transitive closure clustering, so the only workaround is to implement this algorithm in .Net framework and expose it as T-SQL function.
A discussion on the problem, the algorithm and a pure T-SQL based solution can be found here:
- [Transitive Closure Clustering with SQL Server, UDA and JSON](https://medium.com/@mauridb/transitive-closure-clustering-with-sql-server-uda-and-json-dade18953fd2)
- [T-SQL Puzzle Challenge Grouping Connected Items](http://www.itprotoday.com/microsoft-sql-server/t-sql-puzzle-challenge-grouping-connected-items)
This code sample demonstrates how to create CLR User-Defined aggregate that implements clustering.
### Contents
[About this sample](#about-this-sample)<br/>
[Build the CLR/TransitiveClosure aggregate](#build-functions)<br/>
[Add RegEx functions to your SQL database](#add-functions)<br/>
[Test the functions](#test)<br/>
[Disclaimers](#disclaimers)<br/>
<a name=about-this-sample></a>
## About this sample
1. **Applies to:** SQL Server 2016+ Enterprise / Developer / Evaluation Edition
2. **Key features:**
- CLR, JSON
3. **Programming Language:** .NET C#
4. **Author:** [Davide Mauri](https://github.com/yorek), Jovan Popovic [jovanpop-msft]
<a name=build-functions></a>
## Build the CLR/TransitiveClosure aggregate
1. Download the source code and open the solution using Visual Studio.
2. Change the password in .pfk file and rebuild the solution in **Release** mode.
3. Open and save TransitiveClosure.tt to generate output T-SQL file that will contain script that inserts .dll file with the Transitive closure clustering aggregate.
<a name=add-functions></a>
## Add Clustering aggregate to your SQL database
File TransitiveClosure.sql contains the code that will import aggregate into SQL Database.
If you have not added CLR assemblies in your database, you should use the following script to enable CLR:
```
sp_configure @configname=clr_enabled, @configvalue=1
GO
RECONFIGURE
GO
```
Once you enable CLR, you can use the T-SQL script to add the clustering aggregate. The script depends on the location where you have built the project, and might look like:
```
CREATE ASSEMBLY TransitiveClosure FROM 'D:\GitHub\sql-server-samples\samples\features\sql-clr\TransitiveClosure\bin\Release\TransitiveClosureAggregatorLibrary.dll' WITH PERMISSION_SET = SAFE;
GO
CREATE SCHEMA TC;
GO
CREATE AGGREGATE TC.CLUSTERING(@id1 INT, @id2 INT)
RETURNS NVARCHAR(MAX)
EXTERNAL NAME TransitiveClosure.[TransitiveClosure.Aggregate];
```
This code will import assembly in SQL Database and add an aggregate that provides clustering functionalities.
<a name=test></a>
## Test the function
Once you create the assembly and expose the aggregate, you can use it to cluster some relational data in T-SQL code:
```
declare @edges table(n1 int, n2 int);
insert into @edges
values
(1,2),(2,3),(3,4),(4,5),(2,21),(2,22),
(7,8),(8,9),(9,10);
select TC.CLUSTERING(n1,n2)
from @edges;
```
The result will be JSON document that groups the numbers that belong to the same cluster.
```javascript
{
"0":[1,2,3,4,5,21,22],
"1":[7,8,9,10]
}
```
You can transform this JSON document into relational formatusing **OPENJSON** function:
```
select cluster = [key], elements = value
from openjson(
(select TC.CLUSTERING(n1,n2) from @edges)
);
```
The result of this query is:
|cluster|elements|
|---|---|
|0|[1,2,3,4,5,21,22]|
|1|[7,8,9,10]|
<a name=disclaimers></a>
## Disclaimers
The code included in this sample is not intended to be a set of best practices on how to build scalable enterprise grade applications. This is beyond the scope of this sample.
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<#@output extension=".sql"#>
<#@ template language="C#" hostspecific="True" #>
DROP AGGREGATE IF EXISTS TC.CLUSTERING;
GO
DROP SCHEMA IF EXISTS TC;
GO
--Drop the assembly if it already exists
DROP ASSEMBLY IF EXISTS TransitiveClosure;
GO
--Create the assembly
CREATE ASSEMBLY TransitiveClosure FROM '<#= this.Host.ResolvePath("bin\\Release\\TransitiveClosureAggregatorLibrary.dll") #>' WITH PERMISSION_SET = SAFE;
GO
CREATE SCHEMA TC;
GO
CREATE AGGREGATE TC.CLUSTERING(@id1 INT, @id2 INT)
RETURNS NVARCHAR(MAX)
EXTERNAL NAME TransitiveClosure.[TransitiveClosure.Aggregate];
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using System;
using System.IO;
using System.Data.SqlTypes;
using System.Text;
using Microsoft.SqlServer.Server;
using System.Collections.Generic;
using System.Collections;
namespace TransitiveClosure
{
/// <summary>
/// Class that represents a group of numbers in the same cluster.
/// </summary>
public class Group: IEnumerable<int>
{
private int? _groupRoot = null;
private Dictionary<int, bool> _group = new Dictionary<int, bool>();
public Dictionary<int, bool>.KeyCollection Elements => _group.Keys;
public int Count => _group.Keys.Count;
public bool ContainsElement(int element)
{
return _group.ContainsKey(element);
}
/// <summary>
/// Adds a pair of numbers to a group.
/// </summary>
/// <param name="from"></param>
/// <param name="to"></param>
public void AddUnique(int from, int to)
{
if (_groupRoot == null) _groupRoot = from;
this.AddIfNotExists(from);
this.AddIfNotExists(to);
}
/// <summary>
/// Adds the element into the current group.
/// </summary>
/// <param name="element">The number that should be added.</param>
public void Add(int element)
{
if (_groupRoot == null) _groupRoot = element;
_group.Add(element, true);
}
/// <summary>
/// Adds the element to a group if it is not already there.
/// </summary>
/// <param name="element"></param>
public void AddIfNotExists(int element)
{
if (!_group.ContainsKey(element))
{
_group.Add(element, true);
}
}
public void MergeWith(Group source)
{
foreach (var e in source.Elements)
{
this.AddIfNotExists(e);
}
}
public IEnumerator<int> GetEnumerator()
{
foreach(var e in _group.Keys)
{
yield return e;
}
}
IEnumerator IEnumerable.GetEnumerator()
{
return (IEnumerator)GetEnumerator();
}
public override string ToString()
{
return string.Format($"[{_groupRoot.Value}]");
}
}
public class GroupSet: IEnumerable<Group>
{
private List<Group> _groupSet = new List<Group>();
// This keeps about the distinct numbers and in which group they are
private Dictionary<int, Group> _numbers = new Dictionary<int, Group>();
private int _merges = 0;
public int Groups => _groupSet.Count;
public int Numbers => _numbers.Count;
public int Merges => _merges;
public void Add(Group group)
{
_groupSet.Add(group);
foreach(int e in group)
{
if (!_numbers.ContainsKey(e))
_numbers.Add(e, group);
else
throw new ApplicationException("Element is already assigned to a group");
}
}
public List<Group> FindInGroups(int from, int to)
{
var result = new List<Group>();
if (_numbers.ContainsKey(from)) result.Add(_numbers[from]);
if (_numbers.ContainsKey(to)) result.Add(_numbers[to]);
return result;
}
public void AddPair(int from, int to)
{
//Find if the inputValue is already in a group
var foundInGroups = FindInGroups(from, to);
// no item matches: create a new group and add both the values to it
if (foundInGroups.Count == 0)
{
var ng = new Group();
ng.AddIfNotExists(from);
ng.AddIfNotExists(to);
_groupSet.Add(ng);
if (!_numbers.ContainsKey(from)) _numbers.Add(from, ng);
if (!_numbers.ContainsKey(to)) _numbers.Add(to, ng);
}
// one item match, add the related item to the same group
if (foundInGroups.Count == 1)
{
var g = foundInGroups[0];
g.AddUnique(from, to);
if (!_numbers.ContainsKey(from)) _numbers.Add(from, g); else _numbers[from] = g;
if (!_numbers.ContainsKey(to)) _numbers.Add(to, g); else _numbers[to] = g;
}
// if there is a match for both items but in two different groups
// merge them into just one group and delete the other
if (foundInGroups.Count == 2)
{
var g1 = foundInGroups[0];
var g2 = foundInGroups[1];
if (g1 == g2) return;
// Always move the smaller group
if (g2.Count > g1.Count)
{
var t = g1;
g1 = g2;
g2 = t;
}
if (!_numbers.ContainsKey(from)) _numbers.Add(from, g1); else _numbers[from] = g1;
if (!_numbers.ContainsKey(to)) _numbers.Add(to, g1); else _numbers[to] = g1;
g1.MergeWith(g2);
foreach(var e in g2)
{
if (!_numbers.ContainsKey(e)) _numbers.Add(e, g1); else _numbers[e] = g1;
}
_merges += 1;
_groupSet.Remove(g2);
}
}
public IEnumerator<Group> GetEnumerator()
{
foreach(var g in _groupSet)
{
yield return g;
}
}
IEnumerator IEnumerable.GetEnumerator()
{
return (IEnumerator)GetEnumerator();
}
}
/// <summary>
/// Aggregate that takes a pair of numbers that represents an edge in some graph/relation.
/// As an output, returns groups of reachable edges, for example:
/// {
/// "0":[1,2,3,4],
/// "1":[5,6,7],
/// "2":[8,9]
/// }
/// </summary>
[Serializable]
[SqlUserDefinedAggregateAttribute(Format.UserDefined, MaxByteSize = -1)]
public class Aggregate : IBinarySerialize
{
private GroupSet _groupSet;
public int Groups => _groupSet.Groups;
public int Numbers => _groupSet.Numbers;
public int Merges => _groupSet.Merges;
public void Init()
{
_groupSet = new GroupSet();
}
public void Accumulate(int inputValue1, int inputValue2)
{
_groupSet.AddPair(inputValue1, inputValue2);
}
public void Merge(Aggregate value)
{
foreach (var g in value._groupSet)
{
int? pe = null;
foreach (var ce in g)
{
if (pe.HasValue)
{
this.Accumulate(pe.Value, ce);
}
pe = ce;
}
}
}
public SqlString Terminate()
{
return this.ToString();
}
public override string ToString()
{
int c = 0;
StringBuilder sb = new StringBuilder();
sb.Append("{");
foreach (var g in this._groupSet)
{
sb.Append("\"" + c + "\":[");
var ea = new int[g.Elements.Count];
g.Elements.CopyTo(ea, 0);
sb.Append(string.Join(",", ea));
sb.Append("],");
c += 1;
}
if (sb.Length > 1) sb.Remove(sb.Length - 1, 1);
sb.Append("}");
return sb.ToString();
}
public void Read(BinaryReader r)
{
if (r == null) throw new ArgumentNullException("r");
_groupSet = new GroupSet();
// Group Count
int g = r.ReadInt32();
// For Each Group
for (int j = 0; j < g; j++)
{
var l = new Group();
// List Size (or Values Count)
int s = r.ReadInt32();
// Read values and put them in the list
for (int i = 0; i < s; i++)
{
l.Add(r.ReadInt32());
}
// Add list to dictionary
_groupSet.Add(l);
}
}
public void Write(BinaryWriter w)
{
if (w == null) throw new ArgumentNullException("w IS NULL");
// Group count
w.Write(_groupSet.Groups);
foreach (var g in _groupSet)
{
// Values Count
w.Write(g.Count);
// Values
foreach (var e in g)
{
w.Write(e);
}
}
}
}
}
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<?xml version="1.0" encoding="utf-8"?>
<Project ToolsVersion="15.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
<Import Project="$(MSBuildExtensionsPath)\$(MSBuildToolsVersion)\Microsoft.Common.props" Condition="Exists('$(MSBuildExtensionsPath)\$(MSBuildToolsVersion)\Microsoft.Common.props')" />
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<Configuration Condition=" '$(Configuration)' == '' ">Debug</Configuration>
<Platform Condition=" '$(Platform)' == '' ">AnyCPU</Platform>
<ProjectGuid>{097EF341-926D-4DD2-A434-08E9980D6089}</ProjectGuid>
<OutputType>Library</OutputType>
<AppDesignerFolder>Properties</AppDesignerFolder>
<RootNamespace>TransitiveClosureAggregatorLibrary</RootNamespace>
<AssemblyName>TransitiveClosureAggregatorLibrary</AssemblyName>
<TargetFrameworkVersion>v4.5.2</TargetFrameworkVersion>
<FileAlignment>512</FileAlignment>
<TargetFrameworkProfile />
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<DebugType>full</DebugType>
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<PropertyGroup>
<SignAssembly>true</SignAssembly>
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<PropertyGroup>
<AssemblyOriginatorKeyFile>tcc.pfx</AssemblyOriginatorKeyFile>
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<ItemGroup>
<Reference Include="System" />
<Reference Include="System.Core" />
<Reference Include="System.Xml.Linq" />
<Reference Include="System.Data.DataSetExtensions" />
<Reference Include="Microsoft.CSharp" />
<Reference Include="System.Data" />
<Reference Include="System.Net.Http" />
<Reference Include="System.Xml" />
</ItemGroup>
<ItemGroup>
<Compile Include="TransitiveClosureAggregate.cs" />
<Compile Include="Properties\AssemblyInfo.cs" />
</ItemGroup>
<ItemGroup>
<Content Include="TransitiveClosure.sql">
<AutoGen>True</AutoGen>
<DesignTime>True</DesignTime>
<DependentUpon>TransitiveClosure.tt</DependentUpon>
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<Content Include="TransitiveClosure.tt">
<Generator>TextTemplatingFileGenerator</Generator>
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